It wasn't. It was injected into the porous rock at the Bush Dome Reservoir [1], which acted as a natural container of helium. The strategic helium reserve was "expensive" because buying helium for storage was funded by treasury debt, but it was expensive purely only on paper.
I answered that. It wasn't expensive. Building up the stockpile was expensive (but only on paper; financed via treasury debt), but once stored, it required very little maintenance because it was all held underground in porous rock. The only real expense was maintaining the wells.
[1] https://www.tshaonline.org/handbook/entries/bush-dome-reserv...