It could be buggy too. The "Ask HN" section is chronically messed up, showing low-karma posts from days/weeks ago when there are active, high-karma posts being pushed a few pages under.
Or it could be some over-eager powerful flagger :)
Depends on who does the flagging, I think. Some flags are, like, an instant 10-spot demote. Some kick it from the 'news' section of the site completely (but still visible in 'newest').
I suspect there's a 'small flag', too, that doesn't drop the post's ranking unless enough small flags are accumulated.