Don't know the exact details but they mentioned is full of operational footguns, like using it slightly wrong can utterly tank your performance or availability. Many operations are unpredictable so is hard to know what to expect.
Another reason they mentioned is InnoDB, in particular that is the most battle-tested and well-engineered storage engine. With enormous amounts of engineering effort in hardening it for performance and for stability and operability at scale by companies like Google and Facebook.