That wouldn't be a global issue. Airlines each implement their own gate area boarding pass reader software.
So that's a airline specific design decision. It could be that for United, the beep indicates a valid boarding pass of any type, but a display shows the flight info...and the matching is manual.
So that's a airline specific design decision. It could be that for United, the beep indicates a valid boarding pass of any type, but a display shows the flight info...and the matching is manual.